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Sánchez L, Thieffry D. 2001. A Logical Analysis of the Drosophila Gap-gene System. Journal of Theoretical Biology. 211(2):115-141.

Irons DJ. 2009. Logical analysis of the budding yeast cell cycle. Journal of theoretical biology. 257(4):543-59. Abstract

Kouhara H, Hadari YR, Spivak-Kroizman T, Schilling J, Bar-Sagi D, Lax I, Schlessinger J. 1997. A lipid-anchored Grb2-binding protein that links FGF-receptor activation to the Ras/MAPK signaling pathway.. Cell. 89(5):693-702. Abstract

Yokouchi M, Kondo T, Houghton A, Bartkiewicz M, Horne WC, Zhang H, Yoshimura A, Baron R. 1999. Ligand-induced ubiquitination of the epidermal growth factor receptor involves the interaction of the c-Cbl RING finger and UbcH7.. The Journal of biological chemistry. 274(44):31707-12. Abstract

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Johnson AN, Mokalled MH, Haden TN, Olson EN. 2011. JAK/Stat signaling regulates heart precursor diversification in Drosophila. Development. 138(21):4627-4638. Abstract

Luo H, Dearolf CR. 2001. The JAK/STAT pathway and Drosophila development.. BioEssays : news and reviews in molecular, cellular and developmental biology. 23(12):1138-47. Abstract

Hou XS, Perrimon N. 1997. The JAK-STAT pathway in Drosophila.. Trends in genetics : TIG. 13(3):105-10. Abstract

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Corral-Jara KF, Chauvin C, Abou-Joudé W, Grandclaudon M, Naldi A, Soumelis V, Thieffry D. Submitted. Interplay between Smad2 and STAT5A is a critical determinant of IL- 17A/IL-17F differential expression..

Wang G, Amanai K, Wang B, Jiang J. 2000. Interactions with Costal2 and suppressor of fused regulate nuclear translocation and activity of cubitus interruptus.. Genes & development. 14(22):2893-905. Abstract

Grieco L, Calzone L, Bernard-Pierrot I, Radvanyi F, Kahn-Perlès B, Thieffry D. 2013. Integrative modelling of the influence of MAPK network on cancer cell fate decision.. PLoS computational biology. 9(10):e1003286. Abstract

Chen KC, Calzone L, Csikasz-Nagy A, Cross FR, Novak B, Tyson JJ. 2004. Integrative analysis of cell cycle control in budding yeast.. Molecular biology of the cell. 15(8):3841-62. Abstract

Baena-Lopez LA, Nojima H, Vincent J-P. 2012. Integration of morphogen signalling within the growth regulatory network.. Current opinion in cell biology. 24(2):166-72. Abstract

Desterke C, Martinaud C, Ruzehaji N, Le Bousse-Kerdilès M-C. 2015. Inflammation as a Keystone of Bone Marrow Stroma Alterations in Primary Myelofibrosis.. Mediators of inflammation. 2015:415024. Abstract

Pelte N, Robertson AS, Zou Z, Belorgey D, Dafforn TR, Jiang H, Lomas D, Reichhart J-M, Gubb D. 2006. Immune challenge induces N-terminal cleavage of the Drosophila serpin Necrotic.. Insect biochemistry and molecular biology. 36(1):37-46. Abstract

Lum L, Yao S, Mozer B, Rovescalli A, Von Kessler D, Nirenberg M, Beachy PA. 2003. Identification of Hedgehog pathway components by RNAi in Drosophila cultured cells.. Science (New York, N.Y.). 299(5615):2039-45. Abstract

Pepinsky RB, Zeng C, Wen D, Rayhorn P, Baker DP, Williams KP, Bixler SA, Ambrose CM, Garber EA, Miatkowski K et al.. 1998. Identification of a palmitic acid-modified form of human Sonic hedgehog.. The Journal of biological chemistry. 273(22):14037-45. Abstract

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Selvaggio G, Canato S, Pawar A, Monteiro PT, Janody F, Chaouiya C. 2020. Hybrid epithelial-mesenchymal phenotypes are controlled by microenvironmental factors. Cancer Research.

Ingham PW, McMahon AP. 2001. Hedgehog signaling in animal development: paradigms and principles.. Genes & development. 15(23):3059-87.

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Duchek P, Somogyi K, Jékely G, Beccari S, Rørth P. 2001. Guidance of cell migration by the Drosophila PDGF/VEGF receptor.. Cell. 107(1):17-26. Abstract

Xi R, McGregor JR, Harrison DA. 2003. A gradient of JAK pathway activity patterns the anterior-posterior axis of the follicular epithelium.. Developmental cell. 4(2):167-77. Abstract

Orlando DA, Lin CY, Bernard A, Wang JY, Socolar JES, Iversen ES, Hartemink AJ, Haase SB. 2008. Global control of cell-cycle transcription by coupled CDK and network oscillators. Nature. 453(7197):944-7. Abstract

Gonzalez GA, Naldi A, Sánchez L, Thieffry D, Chaouiya C. 2006. GINsim: a software suite for the qualitative modelling, simulation and analysis of regulatory networks.. Bio Systems. 84(2):91-100. Abstract

Ptachne M. 1992. Genetic Switch. Phage Lambda and Higher Organisms (second ed.).

MENDOZA L, Thieffry D, Alvarez-Buylla ER. 1999. Genetic control of flower morphogenesis in Arabidopsis thaliana: a logical analysis. Bioinformatics. 15(7):593-606.

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Bischoff V, Vignal C, Boneca IG, Michel T, Hoffmann JA, Royet J. 2004. Function of the drosophila pattern-recognition receptor PGRP-SD in the detection of Gram-positive bacteria.. Nature immunology. 5(11):1175-80. Abstract