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K
Kondratova M, Barillot E, Zinovyev A, Calzone L.  2020.   Modelling of Immune Checkpoint Network Explains Synergistic Effects of Combined Immune Checkpoint Inhibitor Therapy and the Impact of Cytokines in Patient Response . Cancers. 12(12)
Klint P, Kanda S, Claesson-Welsh L.  1995.  Shc and a novel 89-kDa component couple to the Grb2-Sos complex in fibroblast growth factor-2-stimulated cells.. The Journal of biological chemistry. 270(40):23337-44. Abstract
Klingensmith J, Nusse R.  1994.  Signaling by wingless in Drosophila.. Developmental biology. 166(2):396-414. Abstract
Klamt S, Saez-Rodriguez J, Lindquist JA, Simeoni L, Gilles ED.  2006.  A methodology for the structural and functional analysis of signaling and regulatory networks. BMC Bioinformatics. 7(1):56.
Kiger AA, Jones DL, Schulz C, Rogers MB, Fuller MT.  2001.  Stem cell self-renewal specified by JAK-STAT activation in response to a support cell cue.. Science (New York, N.Y.). 294(5551):2542-5. Abstract
Kamiya Y, Miyazono K, Miyazawa K.  2008.  Specificity of the inhibitory effects of Dad on TGF-beta family type I receptors, Thickveins, Saxophone, and Baboon in Drosophila.. FEBS letters. 582(17):2496-500. Abstract
J
de Jong H.  2002.  Modeling and simulation of genetic regulatory systems: a literature review.. J Comput Biol. 9(1):67-103. Abstract
Johnson AN, Mokalled MH, Haden TN, Olson EN.  2011.  JAK/Stat signaling regulates heart precursor diversification in Drosophila. Development. 138(21):4627-4638. Abstract
I
Irvine KD, Vogt TF.  1997.  Dorsal—ventral signaling in limb development. Current Opinion in Cell Biology. 9(6):867-876.
Irons DJ.  2009.  Logical analysis of the budding yeast cell cycle. Journal of theoretical biology. 257(4):543-59. Abstract
Ingham PW, McMahon AP.  2001.  Hedgehog signaling in animal development: paradigms and principles.. Genes & development. 15(23):3059-87.
H
Hou XS, Perrimon N.  1997.  The JAK-STAT pathway in Drosophila.. Trends in genetics : TIG. 13(3):105-10. Abstract
Hernadez C, Naldi A, Thomas-Chollier M, Thieffry D.  Submitted.  Computational verification of large logical models - application to the prediction of T cell response to checkpoint inhibitors.
Harrison JC, Bardes ES, Ohya Y, Lew DJ.  2001.  A role for the Pkc1p/Mpk1p kinase cascade in the morphogenesis checkpoint.. Nature cell biology. 3(4):417-20. Abstract
Harris KE, Schnittke N, Beckendorf SK.  2007.  Two ligands signal through the Drosophila PDGF/VEGF receptor to ensure proper salivary gland positioning.. Mechanisms of development. 124(6):441-8. Abstract
G
Grieco L, Calzone L, Bernard-Pierrot I, Radvanyi F, Kahn-Perlès B, Thieffry D.  2013.  Integrative modelling of the influence of MAPK network on cancer cell fate decision.. PLoS computational biology. 9(10):e1003286. Abstract
Gonzalez A, Chaouiya C, Thieffry D.  2006.  Dynamical Analysis of the Regulatory Network Defining the Dorsal-Ventral Boundary of the Drosophila Wing Imaginal Disc. Genetics. 174(3):1625-1634.
Gonzalez A, Chaouiya C, Thieffry D.  2008.  Logical modelling of the role of the Hh pathway in the patterning of the Drosophila wing disc. Bioinformatics. 24(16):i234-i240.
Gonzalez GA, Naldi A, Sánchez L, Thieffry D, Chaouiya C.  2006.  GINsim: a software suite for the qualitative modelling, simulation and analysis of regulatory networks.. Bio Systems. 84(2):91-100. Abstract
Gobert V, Gottar M, Matskevich AA, Rutschmann S, Royet J, Belvin M, Hoffmann JA, Ferrandon D.  2003.  Dual activation of the Drosophila toll pathway by two pattern recognition receptors.. Science (New York, N.Y.). 302(5653):2126-30. Abstract
F
Fullaondo A, García-Sánchez S, Sanz-Parra A, Recio E, Lee SY, Gubb D.  2011.  Spn1 regulates the GNBP3-dependent Toll signaling pathway in Drosophila melanogaster.. Molecular and cellular biology. 31(14):2960-72. Abstract
Fuerstenberg S, Giniger E.  1998.  Multiple roles for notch in Drosophila myogenesis.. Developmental biology. 201(1):66-77. Abstract
Floc’hlay S, Molina MD, Hernandez C, Haillot E, Thomas-Chollier M, Lepage T, Thieffry D.  2020.  Deciphering and modelling the TGF-β signalling interplays specifying the dorsal-ventral axis of the sea urchin embryo. Development.
Flobak Å, Baudot A, Remy E, Thommesen L, Thieffry D, Kuiper M, Lægreid A.  2015.  Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling.. PLoS computational biology. 11(8):e1004426. Abstract
Fauré A, Naldi A, Chaouiya C, Thieffry D.  2006.  Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle.. Bioinformatics (Oxford, England). 22(14):e124-31. Abstract


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