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A

Abou-Jaoudé W, Monteiro PT, Naldi A, Grandclaudon M, Soumelis V, Chaouiya C, Thieffry D. 2015. Model checking to assess T-helper cell plasticity. Frontiers in Bioengineering and Biotechnology. 2(86) Abstract

Abou-Jaoudé W, Ouattara DA, Kaufman M. 2009. From structure to dynamics: frequency tuning in the p53-Mdm2 network I. Logical approach.. Journal of theoretical biology. 258(4):561-77. Abstract

Aikin RA, Ayers KL, Thérond PP. 2008. The role of kinases in the Hedgehog signalling pathway.. EMBO reports. 9(4):330-6. Abstract

Alcedo J, Ayzenzon M, Von Ohlen T, Noll M, Hooper JE. 1996. The Drosophila smoothened gene encodes a seven-pass membrane protein, a putative receptor for the hedgehog signal.. Cell. 86(2):221-32. Abstract

Amanai K, Jiang J. 2001. Distinct roles of Central missing and Dispatched in sending the Hedgehog signal.. Development (Cambridge, England). 128(24):5119-27. Abstract

Anderson KV. 2000. Toll signaling pathways in the innate immune response.. Current opinion in immunology. 12(1):13-9. Abstract

Ayers KL, Rodriguez R, Gallet A, Ruel L, Thérond P. 2009. Tow (Target of Wingless), a novel repressor of the Hedgehog pathway in Drosophila.. Developmental biology. 329(2):280-93. Abstract

Ayers KL, Rodriguez R, Gallet A, Ruel L, Thérond P. 2009. Tow (Target of Wingless), a novel repressor of the Hedgehog pathway in Drosophila.. Developmental biology. 329(2):280-93. Abstract

Ayers KL, Thérond PP. 2010. Evaluating Smoothened as a G-protein-coupled receptor for Hedgehog signalling.. Trends in cell biology. 20(5):287-98. Abstract

B

Baena-Lopez LA, Nojima H, Vincent J-P. 2012. Integration of morphogen signalling within the growth regulatory network.. Current opinion in cell biology. 24(2):166-72. Abstract

Bate M, Rushton E. 1993. Myogenesis and muscle patterning in Drosophila.. Comptes rendus de l'Académie des sciences. Série III, Sciences de la vie. 316(9):1047-61. Abstract

Baylies MK, Bate M. 1996. twist: a myogenic switch in Drosophila.. Science (New York, N.Y.). 272(5267):1481-4. Abstract

Béal J, Pantolini L, Noël V, Barillot E, Calzone L. 2021. Personalized logical models to investigate cancer response to BRAF treatments in melanomas and colorectal cancers. PLoS Comput. Biol..

Bischoff V, Vignal C, Boneca IG, Michel T, Hoffmann JA, Royet J. 2004. Function of the drosophila pattern-recognition receptor PGRP-SD in the detection of Gram-positive bacteria.. Nature immunology. 5(11):1175-80. Abstract

Brooks A, Dou W, Yang X, Brosnan T, Pargett M, Raftery LA, Umulis DM. 2012. BMP signaling in wing development: A critical perspective on quantitative image analysis.. FEBS letters. 586(14):1942-52. Abstract

Brückner K, Kockel L, Duchek P, Luque CM, Rørth P, Perrimon N. 2004. The PDGF/VEGF receptor controls blood cell survival in Drosophila.. Developmental cell. 7(1):73-84. Abstract

Brunner D, Dücker K, Oellers N, Hafen E, Scholz H, Klämbt C. 1994. The ETS domain protein pointed-P2 is a target of MAP kinase in the sevenless signal transduction pathway.. Nature. 370(6488):386-9. Abstract

C

Cacace E, Collombet S, Thieffry D. 2020. Logical modeling of cell fate specification - Application to T cell commitment. Current Topics in Developmental Biology.

Calzone L, Tournier L, Fourquet S, Thieffry D, Zhivotovsky B, Barillot E, Zinovyev A. 2010. Mathematical modelling of cell-fate decision in response to death receptor engagement.. PLoS computational biology. 6(3):e1000702. Abstract

Calzone L, Tournier L, Fourquet S, Thieffry D, Zhivotovsky B, Barillot E, Zinovyev A. 2010. Mathematical modelling of cell-fate decision in response to death receptor engagement. PLoS computational biology. 6(3):e1000702. Abstract

Chamoun Z, Mann RK, Nellen D, von Kessler DP, Bellotto M, Beachy PA, Basler K. 2001. Skinny hedgehog, an acyltransferase required for palmitoylation and activity of the hedgehog signal.. Science (New York, N.Y.). 293(5537):2080-4. Abstract

Chaouiya C, REMY E, Thieffry D. 2008. Petri net modelling of biological regulatory networks. Journal of Discrete Algorithms. 6(2):165-177.

Chaouiya C, Naldi A, Thieffry D. 2012. Logical Modelling of Gene Regulatory Networks with GINsim.. Methods in molecular biology (Clifton, N.J.). 804:463-79. Abstract

Chaouiya C, Remy E, Mossé B, Thieffry D. 2003. Qualitative Analysis of Regulatory Graphs: A Computational Tool Based on a Discrete Formal Framework. Positive Systems. 294:830-832.

Chaouiya C. 2011. Computational BiologyModeling in Systems BiologyA Modular, Qualitative Modeling of Regulatory Networks Using Petri Nets. 16:253-279.