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Biblio

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1995
Thieffry D, Thomas R.  1995.  Dynamical behaviour of biological regulatory networks--II. Immunity control in bacteriophage lambda.. Bulletin of mathematical biology. 57(2):277-97. Abstract
1996
Alcedo J, Ayzenzon M, Von Ohlen T, Noll M, Hooper JE.  1996.  The Drosophila smoothened gene encodes a seven-pass membrane protein, a putative receptor for the hedgehog signal.. Cell. 86(2):221-32. Abstract
Chen Y, Struhl G.  1996.  Dual roles for patched in sequestering and transducing Hedgehog.. Cell. 87(3):553-63. Abstract
1997
Irvine KD, Vogt TF.  1997.  Dorsal—ventral signaling in limb development. Current Opinion in Cell Biology. 9(6):867-876.
1998
Vincent S, Wilson R, Coelho C, Affolter M, Leptin M.  1998.  The Drosophila protein Dof is specifically required for FGF signaling.. Molecular cell. 2(4):515-25. Abstract
2000
Pai LM, Barcelo G, Schüpbach T.  2000.  D-cbl, a negative regulator of the Egfr pathway, is required for dorsoventral patterning in Drosophila oogenesis.. Cell. 103(1):51-61. Abstract
2001
Amanai K, Jiang J.  2001.  Distinct roles of Central missing and Dispatched in sending the Hedgehog signal.. Development (Cambridge, England). 128(24):5119-27. Abstract
2003
Gobert V, Gottar M, Matskevich AA, Rutschmann S, Royet J, Belvin M, Hoffmann JA, Ferrandon D.  2003.  Dual activation of the Drosophila toll pathway by two pattern recognition receptors.. Science (New York, N.Y.). 302(5653):2126-30. Abstract
2004
Royet J.  2004.  Drosophila melanogaster innate immunity: an emerging role for peptidoglycan recognition proteins in bacteria detection.. Cellular and molecular life sciences : CMLS. 61(5):537-46. Abstract
2006
Gonzalez A, Chaouiya C, Thieffry D.  2006.  Dynamical Analysis of the Regulatory Network Defining the Dorsal-Ventral Boundary of the Drosophila Wing Imaginal Disc. Genetics. 174(3):1625-1634.
Fauré A, Naldi A, Chaouiya C, Thieffry D.  2006.  Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle.. Bioinformatics (Oxford, England). 22(14):e124-31. Abstract
Queralt E, Lehane C, Novak B, Uhlmann F.  2006.  Downregulation of PP2A(Cdc55) phosphatase by separase initiates mitotic exit in budding yeast.. Cell. 125(4):719-32. Abstract
Wood W, Faria C, Jacinto A.  2006.  Distinct mechanisms regulate hemocyte chemotaxis during development and wound healing in Drosophila melanogaster.. The Journal of cell biology. 173(3):405-16. Abstract
2007
Naldi A, Thieffry D, Chaouiya C.  2007.  Decision Diagrams for the Representation and Analysis of Logical Models of Genetic Networks. Computational Methods in Systems Biology. 4695:233-247.
2010
Naldi A, Carneiro J, Chaouiya C, Thieffry D.  2010.  Diversity and Plasticity of Th Cell Types Predicted from Regulatory Network Modelling. PLoS Computational Biology. 6(9):e1000912.
2011
Valanne S, Wang J-H, Rämet M.  2011.  The Drosophila Toll signaling pathway.. Journal of immunology (Baltimore, Md. : 1950). 186(2):649-56. Abstract
Wartlick O, Mumcu P, Kicheva A, Bittig T, Seum C, Jülicher F, González-Gaitán M.  2011.  Dynamics of Dpp signaling and proliferation control.. Science (New York, N.Y.). 331(6021):1154-9. Abstract
Naldi A, Remy E, Thieffry D, Chaouiya C.  2011.  Dynamically consistent reduction of logical regulatory graphs. Theoretical Computer Science. 412(21):2207-2218.
2014
Fauré A, Vreede BMI, Sucena E, Chaouiya C.  2014.  A discrete model of Drosophila eggshell patterning reveals cell-autonomous and juxtacrine effects. PLoS Comput Biol. 10(3):e1003527.
2015
Flobak Å, Baudot A, Remy E, Thommesen L, Thieffry D, Kuiper M, Lægreid A.  2015.  Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling.. PLoS computational biology. 11(8):e1004426. Abstract
2018
Zanudo JGT, Steinway SN, Albert R.  2018.  Discrete dynamic network modeling of oncogenic signaling: Mechanistic insights for personalized treatment of cancer. Current Opinion in Systems Biology. 9:1-10.
2020
Floc’hlay S, Molina MD, Hernandez C, Haillot E, Thomas-Chollier M, Lepage T, Thieffry D.  2020.  Deciphering and modelling the TGF-β signalling interplays specifying the dorsal-ventral axis of the sea urchin embryo. Development.
Checcoli A, Pol JG, Naldi A, Noel V, Barillot E, Kroemer G, Thieffry D, Calzone L, Stoll G.  2020.  Dynamical Boolean Modeling of Immunogenic Cell Death.
2024
Sánchez-Villanueva J, N’Guyen L, Poplineau M, Duprez E, Remy É, Thieffry D.  2024.  Dynamical modelling of the regulatory network underlying Retinoic Acid resistance in Acute Promyelocytic Leukaemia. European Conference in Computational Biology.


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