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C
Cacace E, Collombet S, Thieffry D.  2020.  Logical modeling of cell fate specification - Application to T cell commitment. Current Topics in Developmental Biology.
Chaouiya C, Naldi A, Thieffry D.  2012.  Logical Modelling of Gene Regulatory Networks with GINsim.. Methods in molecular biology (Clifton, N.J.). 804:463-79. Abstract
Collombet S, van Oevelen C, Sardina Ortega JL, Abou-Jaoudé W, Di Stefano B, Thomas-Chollier M, Graf T, Thieffry D.  2017.  Logical modeling of lymphoid and myeloid cell specification and transdifferentiation.. Proceedings of the National Academy of Sciences of the United States of America. 114(23):5792-5799. Abstract
F
Fauré A, Thieffry D.  2009.  Logical modelling of cell cycle control in eukaryotes: a comparative study. Molecular BioSystems. 5(12):1569.
G
Gonzalez A, Chaouiya C, Thieffry D.  2008.  Logical modelling of the role of the Hh pathway in the patterning of the Drosophila wing disc. Bioinformatics. 24(16):i234-i240.
I
Irons DJ.  2009.  Logical analysis of the budding yeast cell cycle. Journal of theoretical biology. 257(4):543-59. Abstract
K
Kouhara H, Hadari YR, Spivak-Kroizman T, Schilling J, Bar-Sagi D, Lax I, Schlessinger J.  1997.  A lipid-anchored Grb2-binding protein that links FGF-receptor activation to the Ras/MAPK signaling pathway.. Cell. 89(5):693-702. Abstract
M
Mbodj A, Junion G, Brun C, Furlong EEM, Thieffry D.  2013.  Logical modelling of Drosophila signalling pathways.. Molecular bioSystems. 9(9):2248-58. Abstract
N
Nuñez-Reza KJ, Naldi A, Sánchez-Jiménez A, Leon-Apodaca AV, Santana A, Thomas-Chollier M, Thieffry D, Medina-Rivera A.  2021.  Logical modeling of in vitro differentiation of human monocytes into dendritic cells unravels novel transcriptional regulatory interactions.
S
Saez-Rodriguez J, Simeoni L, Lindquist JA, Hemenway R, Bommhardt U, Arndt B, Haus U-U, Weismantel R, Gilles ED, Klamt S et al..  2007.  A logical model provides insights into T cell receptor signaling.. PLoS computational biology. 3(8):e163. Abstract
Sánchez L, Thieffry D.  2001.  A Logical Analysis of the Drosophila Gap-gene System. Journal of Theoretical Biology. 211(2):115-141.
Sánchez L, Chaouiya C.  2018.  Logical modelling uncovers developmental constraints in primary sex determination of chicken gonads. J. R. Soc. Interface. . 15
T
Traynard P, Fauré A, Fages F, Thieffry D.  2016.  Logical model specification aided by model-checking techniques: application to the mammalian cell cycle regulation. Bioinformatics. 32:i772-i780. Abstract
Y
Yokouchi M, Kondo T, Houghton A, Bartkiewicz M, Horne WC, Zhang H, Yoshimura A, Baron R.  1999.  Ligand-induced ubiquitination of the epidermal growth factor receptor involves the interaction of the c-Cbl RING finger and UbcH7.. The Journal of biological chemistry. 274(44):31707-12. Abstract


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