Biblio
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2004. Qualitative Modelling of Genetic Networks: From Logical Regulatory Graphs to Standard Petri Nets. 25th International Conference on Application and Theory of Petri Nets. 3099:137-156.
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2005. Qualitative modelling of regulated metabolic pathways: application to the tryptophan biosynthesis in E.coli.. Bioinformatics (Oxford, England). 21 Suppl 2:ii190-6. Abstract
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2006. Dynamical Analysis of the Regulatory Network Defining the Dorsal-Ventral Boundary of the Drosophila Wing Imaginal Disc. Genetics. 174(3):1625-1634.
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2006. GINsim: a software suite for the qualitative modelling, simulation and analysis of regulatory networks.. Bio Systems. 84(2):91-100. Abstract
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2008. Petri net modelling of biological regulatory networks. Journal of Discrete Algorithms. 6(2):165-177.
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2008. Logical modelling of the role of the Hh pathway in the patterning of the Drosophila wing disc. Bioinformatics. 24(16):i234-i240.
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2014. A discrete model of Drosophila eggshell patterning reveals cell-autonomous and juxtacrine effects. PLoS Comput Biol. 10(3):e1003527.
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2015. Model checking to assess T-helper cell plasticity. Frontiers in Bioengineering and Biotechnology. 2(86) Abstract
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2018. Logical modelling uncovers developmental constraints in primary sex determination of chicken gonads. J. R. Soc. Interface. . 15
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2020. Hybrid epithelial-mesenchymal phenotypes are controlled by microenvironmental factors. Cancer Research.