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Journal Article

Kondratova M, Barillot E, Zinovyev A, Calzone L. 2020. Modelling of Immune Checkpoint Network Explains Synergistic Effects of Combined Immune Checkpoint Inhibitor Therapy and the Impact of Cytokines in Patient Response . Cancers. 12(12)

Lee JJ, Ekker SC, von Kessler DP, Porter JA, Sun BI, Beachy PA. 1994. Autoproteolysis in hedgehog protein biogenesis.. Science (New York, N.Y.). 266(5190):1528-37. Abstract

Sutherland D, Samakovlis C, Krasnow MA. 1996. branchless encodes a Drosophila FGF homolog that controls tracheal cell migration and the pattern of branching.. Cell. 87(6):1091-101. Abstract

Rodríguez-Jorge O, Kempis-Calanis LA, Abou-Jaoudé W, Gutiérrez-Reyna DY, Hernandez C, Ramirez-Pliego O, Thomas-Chollier M, Spicuglia S, Santana MA, Thieffry D. 2019. Cooperation between T cell receptor and Toll-like receptor 5 signaling for CD4+ T cell activation.. Science Signaling.

Flobak Å, Baudot A, Remy E, Thommesen L, Thieffry D, Kuiper M, Lægreid A. 2015. Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling.. PLoS computational biology. 11(8):e1004426. Abstract

Checcoli A, Pol JG, Naldi A, Noel V, Barillot E, Kroemer G, Thieffry D, Calzone L, Stoll G. 2020. Dynamical Boolean Modeling of Immunogenic Cell Death.

Wartlick O, Mumcu P, Kicheva A, Bittig T, Seum C, Jülicher F, González-Gaitán M. 2011. Dynamics of Dpp signaling and proliferation control.. Science (New York, N.Y.). 331(6021):1154-9. Abstract

Brunner D, Dücker K, Oellers N, Hafen E, Scholz H, Klämbt C. 1994. The ETS domain protein pointed-P2 is a target of MAP kinase in the sevenless signal transduction pathway.. Nature. 370(6488):386-9. Abstract

Abou-Jaoudé W, Ouattara DA, Kaufman M. 2009. From structure to dynamics: frequency tuning in the p53-Mdm2 network I. Logical approach.. Journal of theoretical biology. 258(4):561-77. Abstract

Grieco L, Calzone L, Bernard-Pierrot I, Radvanyi F, Kahn-Perlès B, Thieffry D. 2013. Integrative modelling of the influence of MAPK network on cancer cell fate decision.. PLoS computational biology. 9(10):e1003286. Abstract

Yokouchi M, Kondo T, Houghton A, Bartkiewicz M, Horne WC, Zhang H, Yoshimura A, Baron R. 1999. Ligand-induced ubiquitination of the epidermal growth factor receptor involves the interaction of the c-Cbl RING finger and UbcH7.. The Journal of biological chemistry. 274(44):31707-12. Abstract

Kouhara H, Hadari YR, Spivak-Kroizman T, Schilling J, Bar-Sagi D, Lax I, Schlessinger J. 1997. A lipid-anchored Grb2-binding protein that links FGF-receptor activation to the Ras/MAPK signaling pathway.. Cell. 89(5):693-702. Abstract

Saez-Rodriguez J, Simeoni L, Lindquist JA, Hemenway R, Bommhardt U, Arndt B, Haus U-U, Weismantel R, Gilles ED, Klamt S et al.. 2007. A logical model provides insights into T cell receptor signaling.. PLoS computational biology. 3(8):e163. Abstract

Klamt S, Saez-Rodriguez J, Lindquist JA, Simeoni L, Gilles ED. 2006. A methodology for the structural and functional analysis of signaling and regulatory networks. BMC Bioinformatics. 7(1):56.

Sahin O, Fröhlich H, Löbke C, Korf U, Burmester S, Majety M, Mattern J, Schupp I, Chaouiya C, Thieffry D et al.. 2009. Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance. BMC systems biology. 3:1. Abstract

Brückner K, Kockel L, Duchek P, Luque CM, Rørth P, Perrimon N. 2004. The PDGF/VEGF receptor controls blood cell survival in Drosophila.. Developmental cell. 7(1):73-84. Abstract

Klint P, Kanda S, Claesson-Welsh L. 1995. Shc and a novel 89-kDa component couple to the Grb2-Sos complex in fibroblast growth factor-2-stimulated cells.. The Journal of biological chemistry. 270(40):23337-44. Abstract

Klingensmith J, Nusse R. 1994. Signaling by wingless in Drosophila.. Developmental biology. 166(2):396-414. Abstract

Chamoun Z, Mann RK, Nellen D, von Kessler DP, Bellotto M, Beachy PA, Basler K. 2001. Skinny hedgehog, an acyltransferase required for palmitoylation and activity of the hedgehog signal.. Science (New York, N.Y.). 293(5537):2080-4. Abstract

Kamiya Y, Miyazono K, Miyazawa K. 2008. Specificity of the inhibitory effects of Dad on TGF-beta family type I receptors, Thickveins, Saxophone, and Baboon in Drosophila.. FEBS letters. 582(17):2496-500. Abstract

Kiger AA, Jones DL, Schulz C, Rogers MB, Fuller MT. 2001. Stem cell self-renewal specified by JAK-STAT activation in response to a support cell cue.. Science (New York, N.Y.). 294(5551):2542-5. Abstract

Takeda K, Kaisho T, Akira S. 2003. Toll-like receptors.. Annual review of immunology. 21:335-76. Abstract

Levkowitz G, Waterman H, Ettenberg SA, Katz M, Tsygankov AY, Alroy I, Lavi S, Iwai K, Reiss Y, Ciechanover A et al.. 1999. Ubiquitin ligase activity and tyrosine phosphorylation underlie suppression of growth factor signaling by c-Cbl/Sli-1.. Molecular cell. 4(6):1029-40. Abstract

Book

Chaouiya C. 2011. Computational BiologyModeling in Systems BiologyA Modular, Qualitative Modeling of Regulatory Networks Using Petri Nets. 16:253-279.